OpenDDI
OpenDDI: 开源药物相互作用预测框架
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Documentation overview
Index
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A
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B
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C
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D
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E
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F
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G
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I
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L
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M
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N
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P
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R
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S
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T
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U
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W
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Z
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__init__() (openddi.data.BaseDataset.BaseDataset method)
(openddi.data.BaseDataset.BaseMultiDataset method)
(openddi.data.BaseDataset.BaseMultiLabelDataset method)
(openddi.data.dataset_manager.dataset_manager method)
(openddi.data.GoGNN_dataset.GoGNN_dataset method)
(openddi.data.MRCGNN_dataset.MRCGNN_dataset method)
(openddi.data.MUFFIN_dataset.MUFFIN_dataset method)
(openddi.data.MVA_dataset.MVA_dataset method)
(openddi.data.TIGER_dataset.TIGER_dataset method)
(openddi.data.Unified_dataset.UnifiedDataset method)
(openddi.data.ZeroDDI_dataset.ZeroDDI_dataset method)
(openddi.pipeline.Pipeline method)
(openddi.utils.logger.Logger method)
_metrics_from_logits() (in module openddi.evaluate.evaluate)
_metrics_from_logits_multilabel() (in module openddi.evaluate.evaluate)
A
add_gaussian_noise() (openddi.data.BaseDataset.FeatureProcessingModule static method)
add_label_noise_multiclass() (openddi.data.BaseDataset.DataSplittingModule static method)
add_label_noise_multilabel() (openddi.data.BaseDataset.DataSplittingModule static method)
B
BaseDataset (class in openddi.data.BaseDataset)
BaseMultiDataset (class in openddi.data.BaseDataset)
BaseMultiLabelDataset (class in openddi.data.BaseDataset)
build_feature_matrix() (openddi.data.BaseDataset.FeatureProcessingModule static method)
build_multigraph() (openddi.data.BaseDataset.GraphConstructionModule static method)
build_pairs_labels_splits() (openddi.data.BaseDataset.BaseDataset method)
build_single_relation_graph() (openddi.data.BaseDataset.GraphConstructionModule static method)
C
compute_multiclass_metrics() (in module openddi.utils.utils)
create_dataloader_config() (openddi.data.BaseDataset.DataLoaderCreationModule static method)
create_logger() (in module openddi.utils.logger)
create_multiclass_dataloaders() (openddi.data.BaseDataset.DataLoaderCreationModule static method)
create_multilabel_dataloaders() (openddi.data.BaseDataset.DataLoaderCreationModule static method)
critical() (openddi.utils.logger.Logger method)
D
DataLoaderCreationModule (class in openddi.data.BaseDataset)
DataLoadingModule (class in openddi.data.BaseDataset)
dataset_manager (class in openddi.data.dataset_manager)
DataSplittingModule (class in openddi.data.BaseDataset)
debug() (openddi.utils.logger.Logger method)
E
ensure_dir() (in module openddi.utils.utils)
error() (openddi.utils.logger.Logger method)
F
FeatureProcessingModule (class in openddi.data.BaseDataset)
G
get_data_stats() (openddi.data.BaseDataset.BaseDataset method)
get_noise_config() (openddi.data.Unified_dataset.UnifiedDataset method)
GoGNN_dataset (class in openddi.data.GoGNN_dataset)
GraphConstructionModule (class in openddi.data.BaseDataset)
I
info() (openddi.utils.logger.Logger method)
L
load_data() (openddi.data.BaseDataset.BaseDataset method)
(openddi.data.GoGNN_dataset.GoGNN_dataset method)
(openddi.data.MRCGNN_dataset.MRCGNN_dataset method)
(openddi.data.MUFFIN_dataset.MUFFIN_dataset method)
(openddi.data.MVA_dataset.MVA_dataset method)
(openddi.data.TIGER_dataset.TIGER_dataset method)
(openddi.data.Unified_dataset.UnifiedDataset method)
(openddi.data.ZeroDDI_dataset.ZeroDDI_dataset method)
load_dataset() (openddi.data.dataset_manager.dataset_manager method)
load_trainer() (openddi.pipeline.Pipeline method)
Logger (class in openddi.utils.logger)
M
main() (in module openddi.main)
MRCGNN_dataset (class in openddi.data.MRCGNN_dataset)
MUFFIN_dataset (class in openddi.data.MUFFIN_dataset)
MVA_dataset (class in openddi.data.MVA_dataset)
N
normalize() (in module openddi.utils.utils)
normalize_adj() (in module openddi.utils.utils)
normalize_features() (openddi.data.BaseDataset.FeatureProcessingModule static method)
P
Pipeline (class in openddi.pipeline)
plot_metric() (in module openddi.utils.utils)
plot_metrics() (in module openddi.evaluate.evaluate)
R
read_id_embedding_pt() (openddi.data.BaseDataset.DataLoadingModule static method)
read_id_embedding_pt_split() (openddi.data.BaseDataset.DataLoadingModule static method)
read_multi_pairs_and_remap() (openddi.data.BaseDataset.DataLoadingModule static method)
read_multilabel_pairs_and_remap() (openddi.data.BaseDataset.DataLoadingModule static method)
run() (openddi.pipeline.Pipeline method)
S
set_random_seed() (in module openddi.parms_setting)
(in module openddi.utils.utils)
settings() (in module openddi.parms_setting)
skip_adj() (in module openddi.utils.utils)
sparse_dropout() (openddi.data.BaseDataset.FeatureProcessingModule static method)
sparse_mx_to_torch_sparse_tensor() (in module openddi.utils.utils)
sparse_sampling_multiclass() (openddi.data.BaseDataset.DataSplittingModule static method)
split_data() (openddi.data.BaseDataset.DataSplittingModule static method)
split_data_generalization() (openddi.data.BaseDataset.DataSplittingModule static method)
split_multilabel_data() (openddi.data.BaseDataset.DataSplittingModule static method)
split_multilabel_data_generalization() (openddi.data.BaseDataset.DataSplittingModule static method)
T
TIGER_dataset (class in openddi.data.TIGER_dataset)
U
UnifiedDataset (class in openddi.data.Unified_dataset)
W
warning() (openddi.utils.logger.Logger method)
Z
ZeroDDI_dataset (class in openddi.data.ZeroDDI_dataset)